STAGATE
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Installation (tensorflow1 framework)
Installation (pyG framework)
Tutorial 1: 10x Visium (DLPFC dataset)
Tutorial 2: The usage of cell type-aware module for 10x Visium
Tutorial 3: Slide-seqV2 mouse olfactory bulb
Tutorial 4: Stereo-seq mouse olfactory bulb
Tutorial 5: 3D spatial domain identification
Tutorial 6: Denoising
Tutorial 7: Slide-seqV2 mouse olfactory bulb (pyG framework)
Tutorial 8: Batch training strategy (pyG framework)
Tutorial 9: ISH-based STARmap dataset
Additional Tutorial 1: Work for multiple sections (without batch effects)
Additional Tutorial 2: Work for multiple sections (STAGATE + Harmony)
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