Installation (tensorflow1 framework)

Software dependencies

scanpy
tensorflow==1.15.0

The use of the mclust algorithm requires the rpy2 package and the mclust package. See https://pypi.org/project/rpy2/ and https://cran.r-project.org/web/packages/mclust/index.html for detail.

Installation

Downloading STAGATE code from https://github.com/QIFEIDKN/STGATE

cd STAGATE-main
python setup.py build
python setup.py install

import STAGATE