Installation (pyG framework)

Software dependencies

scanpy
pytorch
pyG

The use of the mclust algorithm requires the rpy2 package and the mclust package. See https://pypi.org/project/rpy2/ and https://cran.r-project.org/web/packages/mclust/index.html for detail.

The cell type-aware module has not been supported by STAGATE_pyG yet.

Installation

Downloading STAGATE_pyG code from https://github.com/QIFEIDKN/STGATE_pyG

cd STAGATE_pyG-main
python setup.py build
python setup.py install

import STAGATE_pyG